plot_deSp_multiGroup

Source: R/plot_deSp_multiGroup.R

This function is for plotting the results of lipid species differential expression analysis.

plot_deSp_multiGroup(deSp_se)

Arguments

deSp_se

A SummarizedExperiment object with results computed by deSp_multiGroup.

Value

Return a list of 1 interactive plot, 1 static plot, and 1 table.

  1. interactive_de_lipid & static_de_lipid: a lollipop chart reveals the top 20 lipid species that pass chosen cut-off.

  2. interactive_dotPlot & static_dotPlot: a dot plot reveals the all lipid species that pass chosen cut-off.

  3. table_de_lipid: table for plotting DE lipid plot.

  4. table_dotPlot: table for plotting dot plot.

Examples

data("se_multiGroup")
processed_se <- data_process(
    se=se_multiGroup, exclude_missing=TRUE, exclude_missing_pct=70,
    replace_na_method='min', replace_na_method_ref=0.5,
    normalization='Percentage')
deSp_se <- deSp_multiGroup(processed_se, ref_group='ctrl', test='One-way ANOVA',
    significant='pval', p_cutoff=0.05, transform='log10')
deSp_plot <- plot_deSp_multiGroup(deSp_se)