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plot_data_process

Source: R/plot_data_process.R
plot_data_process.Rd

This function plots the differences in abundance data before and after data processing.

Usage

plot_data_process(se, processed_se)

Arguments

se

A SummarizedExperiment object construct by as_summarized_experiment.

processed_se

A SummarizedExperiment object constructed by as_summarized_experiment and processed by data_process.

Value

Return a list with 4 static plots and 4 interactive plots.

  1. static_boxPlot_before: a static bar plot of lipid abundance before data processing.

  2. static_densityPlot_before: a static density plot of lipid abundance before data processing.

  3. static_boxPlot_after: a static bar plot of lipid abundance before data processing.

  4. static_densityPlot_after: a static density plot of lipid abundance after data processing.

  5. interactive_boxPlot_before: an interactive bar plot of lipid abundance before data processing.

  6. interactive_densityPlot_before: an interactive density plot of lipid abundance before data processing.

  7. interactive_boxPlot_after: an interactive bar plot of lipid abundance after data processing.

  8. interactive_densityPlot_after: an interactive density plot of lipid abundance after data processing.

Examples

data("profiling_data")
processed_se <- data_process(
    profiling_data, exclude_missing=TRUE, exclude_missing_pct=70,
    replace_na_method='min', replace_na_method_ref=0.5,
    normalization='Percentage', transform='log10')
plots <- plot_data_process(profiling_data, processed_se)