extract_summarized_experiment

Source: R/utils-df.R

This function returns a list of data frames includes abundance data, lipid characteristic table, group information table, and other analysis results from a SummarizedExperiment object.

extract_summarized_experiment(se)

Arguments

se

A SummarizedExperiment object.

Value

Return a list of data frames.

Examples

data("de_data_twoGroup")
processed_se <- data_process(
    de_data_twoGroup, exclude_missing=TRUE, exclude_missing_pct=70,
    replace_na_method='min', replace_na_method_ref=0.5,
    normalization='Percentage')
deSp_se <- deSp_twoGroup(processed_se, ref_group='ctrl', test='t-test',
    significant='padj', p_cutoff=0.05, FC_cutoff=2, transform='log10')
table_list <- extract_summarized_experiment(deSp_se)