abundance_rna — abundance

A data frame of transcriptomic (RNA) abundance data for the multi-omics integration workflow (as_MultiAssayExperiment. The RNA abundance data were obtained from the transcriptomic profiling of a hepatocellular carcinoma (HCC) cohort of 98 patients recruited between 2011 and 2013. Samples are paired with the matching lipidomic profiling in abundance_lipidOmics and the sample grouping in group_info_multiOmics.

Usage

data("abundance_rna")

Format

A data frame with 1118 observations (genes) on 60 variables. The first column, gene_symbol, is a character vector of gene symbols (renamed to feature internally by as_summarized_experiment). The remaining 59 columns are numeric vectors of RNA abundance values, one column per patient sample, named with de-identified sample IDs (e.g. t_10126828) matching abundance_lipidOmics and group_info_multiOmics.

Source

Ma WL, et al. Ether-lipids accumulation promotes hepatocellular carcinoma progression linked to PPARα deficiency. J Biomed Sci. 2025;32(1):89. doi:10.1186/s12929-025-01178-y

Examples

data(abundance_rna)